NIfTI-MRS Software

This page provides a list of software compatible with NIfTI-MRS.

Conversion

Conversion to NIfTI-MRS from other data formats is primarily provided by spec2nii (Github).

To convert images acquired with MRS data we recommend dcm2niix (Github).

I/O libraries

A number of NIfTI libraries are available and suitable for working with NIfTI-MRS. Many of these are utilised for the minimal code examples contained in the NIfTI-MRS repository.

#	Language	Link
1	JAVA	https://github.com/amirshamaei/NIfTI-MRS
2	Matlab	https://github.com/xiangruili/dicm2nii
3	Python	https://nipy.org/nibabel/
4	MatlabR	https://github.com/jonclayden/RNifti

Visualisation

A NIfTI-MRS visualiser is available using FSLeyes combined with the dedicated FSLeyes MRS plugin.

MRS analysis

The following analysis packages are known to be compatible with NIfTI-MRSI

FSL-MRS - FSL page, Github, docs
Spant -  CRAN page, Github, docs
Osprey -  Github, docs
VESPA -  Github, docs